Highlighted Research

Our research consists in a multidisciplinary approach of integrating tools and concepts from evolutionary theory, computational biology, genomics, genetics and plant pathology/mycology in order to study these phenomena, as well as to create computational and molecular tools for the rapid identification of species, populations, genes of interest and molecular patterns of fungal evolution.

For a full list of publications go to this link

2025

New genomic resources for insect-vectored plant pathogenic fungal species in the Ceratocystidaceae and Ophiostomataceae: Bretziella, Ceratocystis, and Ophiostoma

Catalina Salgado-Salazar, Schyler Nunziata, Shayla Bassingthwaite, Jovana Jonic, Kurt Zeller, Kirk Broders, Yazmín Rivera, Javier F. Tabima

Mycological Progress  ·  03 Oct 2025  ·  doi:10.1007/s11557-025-02090-3

Characterization of a core fungal community and captivity-induced “mycobiome” change in Fowler’s Toad (Anaxyrus fowleri)

Alexander J Bradshaw, Sinlan Poo, Tracey E. Malter, Rylie M. Strasbaugh, Brianna Bodner, Madison R. Hincher, Anne Devan-Song, Javier F. Tabima

Cold Spring Harbor Laboratory  ·  08 Jul 2025  ·  doi:10.1101/2025.07.08.659677

Dissecting the function of the DNMT2-homolog (DNMA) in Dictyostelium discoideum

Zaza Gelashvili, Denis A Larochelle, Jacqueline M Dresch, Maddison Hincher, Javier F Tabima, Robert A Drewell

G3: Genes, Genomes, Genetics  ·  04 Jul 2025  ·  doi:10.1093/g3journal/jkaf152

Unraveling the Genomic and Phylogenetic Complexity of the understudied microfungus Basidiobolus: Insights from 19 Newly Sequenced Genomes

Jasper P. Carleton, Alexander J. Bradshaw, Liam Cleary, Madison R. Hincher, Kathryn Bushley, Javier F. Tabima

Cold Spring Harbor Laboratory  ·  05 Apr 2025  ·  doi:10.1101/2025.03.31.646025

Effects of urbanization on the microbial fungal communities from water, sediment, and amphibian hosts across a rural-to-urban waterway in Worcester, Massachusetts

Sara J. Wheeler, Manning DelCogliano, Brennan Hare, Alexander J. Bradshaw, Madison R. Hincher, Jasper P. Carleton, Philip J. Bergmann, Nathan Ahlgren, Javier F. Tabima

Cold Spring Harbor Laboratory  ·  02 Apr 2025  ·  doi:10.1101/2025.04.01.646624

Ubiquity and diversity of Basidiobolus across amphibian species inhabiting an urbanization gradient

Madison R. Hincher, Jasper P. Carleton, Sara J. Wheeler, Manning DelCogliano, Kaitlyn Mathis, Javier F. Tabima

Mycologia  ·  28 Feb 2025  ·  doi:10.1080/00275514.2025.2455909

2024

Population-level immunologic variation in wild threespine stickleback (Gasterosteus aculeatus)

Anika M. Wohlleben, Javier F. Tabima, Néva P. Meyer, Natalie C. Steinel

Fish & Shellfish Immunology  ·  01 Jun 2024  ·  doi:10.1016/j.fsi.2024.109580

Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria

Lluvia Vargas-Gastélum, Alexander S. Romer, Marjan Ghotbi, Jason W. Dallas, N. Reed Alexander, …, Leila Shadmani, Joseph W. Spatafora, Jason E. Stajich, Javier F. Tabima, Donald M. Walker

mSphere  ·  26 Mar 2024  ·  doi:10.1128/msphere.00475-23

Climatic variability, spatial heterogeneity and the presence of multiple hosts drive the population structure of the pathogen Phytophthora ramorum and the epidemiology of Sudden Oak Death

Melina Kozanitas, Brian J. Knaus, Javier F. Tabima, Niklaus J. Grünwald, Matteo Garbelotto

Ecography  ·  31 Jan 2024  ·  doi:10.1111/ecog.07012

2023

Secreted Effector Proteins of Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways

Yao Zhao, Xinyue Zheng, Javier F. Tabima, Sheng Zhu, Kelsey L. Søndreli, …, Yaxin Zhang, Jeremy Schmutz, Yuanchao Wang, Jared M. LeBoldus, Qin Xiong

Molecular Plant-Microbe Interactions®  ·  01 Dec 2023  ·  doi:10.1094/MPMI-07-23-0091-R

Rapid New Diagnostic LAMP (Loop-Mediated Isothermal Amplification) Assays to Distinguish Among the Four Lineages of Phytophthora ramorum

Kelsey L. Søndreli, Javier F. Tabima, Jared M. LeBoldus

Plant Disease  ·  31 Oct 2023  ·  doi:10.1094/PDIS-08-22-1965-RE

Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria

Lluvia Vargas-Gastélum, Alexander S. Romer, N. Reed Alexander, Marjan Ghotbi, Kylie C. Moe, …, Leila Shadmani, Joseph W. Spatafora, Jason E. Stajich, Javier F. Tabima, Donald M. Walker

Cold Spring Harbor Laboratory  ·  25 Aug 2023  ·  doi:10.1101/2023.08.23.554450

Exploring Gene Expression Patterns and Evolutionary Responses in Host-Parasite inteactions: Insights from theSchistocephalus solidus– Threespine stickleback System

Anika M. Wohlleben, Javier F. Tabima, Néva P. Meyer, Natalie C. Steinel

Cold Spring Harbor Laboratory  ·  19 Jul 2023  ·  doi:10.1101/2023.07.18.547692

The Dictyostelium discoideum genome lacks significant DNA methylation and uncovers palindromic sequences as a source of false positives in bisulfite sequencing

Robert A Drewell, Tayla C Cormier, Jacob L Steenwyk, James St Denis, Javier F Tabima, Jacqueline M Dresch, Denis A Larochelle

NAR Genomics and Bioinformatics  ·  29 Mar 2023  ·  doi:10.1093/nargab/lqad035

First Report of Pyricularia oryzae Causing Gray Leaf Spot of Perennial Ryegrass (Lolium perenne) in Oregon

E. Braithwaite, R. Wang, A. Kowalewski, J. F. Tabima, T. N. Temple, H. M. Rivedal

Plant Health Progress  ·  01 Jan 2023  ·  doi:10.1094/PHP-11-22-0119-BR

Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome Plasticity and Horizontal Gene Transfer

Brent A. Kronmiller, Nicolas Feau, Danyu Shen, Javier F. Tabima, Shahin S. Ali, …, Nari M. Williams, Wenwu Ye, Yuanchao Wang, Richard C. Hamelin, Niklaus J. Grünwald

Molecular Plant-Microbe Interactions®  ·  01 Jan 2023  ·  doi:10.1094/MPMI-06-22-0133-R

2022

Genome Sequence of the Estuarine Synechococcus sp. Strain NB0720_010

Campbell A. MacKenzie, Marcia F. Marston, Javier F. Tabima, Nathan A. Ahlgren

Microbiology Resource Announcements  ·  18 Aug 2022  ·  doi:10.1128/mra.00151-22

Genetic Diversity and Aggressiveness of Fusarium virguliforme Isolates Across the Midwestern United States

Rodrigo A. Olarte, Rebecca Hall, Javier F. Tabima, Dean Malvick, Kathryn Bushley

Phytopathology®  ·  01 Jun 2022  ·  doi:10.1094/PHYTO-05-21-0191-R

Identity and Pathogenicity of Fungi Associated with Root, Crown, and Vascular Symptoms Related to Winter Squash Yield Decline

Hannah M. Rivedal, Javier F. Tabima, Alexandra G. Stone, Kenneth B. Johnson

Plant Disease  ·  01 Jun 2022  ·  doi:10.1094/PDIS-09-20-2090-RE

Tolypocladamide H and the Proposed Tolypocladamide NRPS in Tolypocladium Species

Richard M. Tehan, Rheannon R. Blount, Ryan L. Goold, Daphne R. Mattos, Nicolas R. Spatafora, …, Romina Gazis, Chengshu Wang, Jane E. Ishmael, Joseph W. Spatafora, Kerry L. McPhail

Journal of Natural Products  ·  02 May 2022  ·  doi:10.1021/acs.jnatprod.2c00153

2021

Spatial Genetic Structure of the Insect-Vectored Conifer Pathogen Leptographium wageneri Suggests Long Distance Gene Flow Among Douglas-fir Plantations in Western Oregon

Patrick I. Bennett, Javier F. Tabima, Anna L. Leon, John Browning, Michael J. Wingfield, Jared M. LeBoldus

Frontiers in Forests and Global Change  ·  28 Jul 2021  ·  doi:10.3389/ffgc.2021.695981

QTL Analysis of Adult Plant Resistance to Stripe Rust in a Winter Wheat Recombinant Inbred Population

Kali M. Brandt, Xianming Chen, Javier F. Tabima, Deven R. See, Kelly J. Vining, Robert S. Zemetra

Plants  ·  18 Mar 2021  ·  doi:10.3390/plants10030572

The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility

Nathaly Andrea Montenegro Benavides, Alejandro Alvarez B., Mario L. Arrieta-Ortiz, Luis Miguel Rodriguez-R, David Botero, Javier Felipe Tabima, Luisa Castiblanco, Cesar Trujillo, Silvia Restrepo, Adriana Bernal

BMC Microbiology  ·  06 Jan 2021  ·  doi:10.1186/s12866-020-02066-1

Molecular Phylogenomics and Population Structure of Phytophthora pluvialis

Javier F. Tabima, Lilah Gonen, Mireia Gómez-Gallego, Preeti Panda, Niklaus J. Grünwald, Everett M. Hansen, Rebecca McDougal, Jared M. LeBoldus, Nari M. Williams

Phytopathology®  ·  01 Jan 2021  ·  doi:10.1094/PHYTO-06-20-0232-FI

2020

Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus

Javier F Tabima, Ian A Trautman, Ying Chang, Yan Wang, Stephen Mondo, Alan Kuo, Asaf Salamov, Igor V Grigoriev, Jason E Stajich, Joseph W Spatafora

G3 Genes|Genomes|Genetics  ·  01 Sep 2020  ·  doi:10.1534/g3.120.401516

basidiobolus-sm-genomics

Designing a Socio-Cultural Approachfor Teaching and Learning Computational Thinking

Francisco Buitrago-Flórez, Giovanna Danies, Javier Tabima, Silvia Restrepo, Carola Hernández

Nordic Journal of Digital Literacy  ·  02 Jul 2020  ·  doi:10.18261/issn.1891-943x-2020-02-03

Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans

Brian J. Knaus, Javier F. Tabima, Shankar K. Shakya, Howard S. Judelson, Niklaus J. Grünwald

mBio  ·  30 Jun 2020  ·  doi:10.1128/mBio.00326-20

Unexpected conservation and global transmission of agrobacterial virulence plasmids

Alexandra J. Weisberg, Edward W. Davis, Javier Tabima, Michael S. Belcher, Marilyn Miller, Chih-Horng Kuo, Joyce E. Loper, Niklaus J. Grünwald, Melodie L. Putnam, Jeff H. Chang

Science  ·  05 Jun 2020  ·  doi:10.1126/science.aba5256

Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races

Thomas M. Adams, Andrew D. Armitage, Maria K. Sobczyk, Helen J. Bates, Javier F. Tabima, …, Brett M. Tyler, Niklaus J. Grünwald, Jim M. Dunwell, Charlotte F. Nellist, Richard J. Harrison

Frontiers in Microbiology  ·  15 Apr 2020  ·  doi:10.3389/fmicb.2020.00490

Phylogenomic analyses of non-Dikarya fungi supports horizontal gene transfer driving diversification of secondary metabolism in the amphibian gastrointestinal symbiont, Basidiobolus

Javier Felipe Tabima, Ian A. Trautman, Ying Chang, Yan Wang, Stephen J. Mondo, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora

Cold Spring Harbor Laboratory  ·  09 Apr 2020  ·  doi:10.1101/2020.04.08.030916

Population Genomic Analyses Reveal Connectivity via Human-Mediated Transport across Populus Plantations in North America and an Undescribed Subpopulation of Sphaerulina musiva

J. F. Tabima, K. L. Søndreli, S. Keriö, N. Feau, M. L. Sakalidis, R. C. Hamelin, J. M. LeBoldus

Molecular Plant-Microbe Interactions®  ·  01 Feb 2020  ·  doi:10.1094/MPMI-05-19-0131-R

2019

Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races

Thomas M. Adams, Andrew D. Armitage, Maria K. Sobczyk, Helen J. Bates, Javier F. Tabima, …, Brett M. Tyler, Niklaus J. Grünwald, Jim M. Dunwell, Charlotte F. Nellist, Richard J. Harrison

Cold Spring Harbor Laboratory  ·  30 Nov 2019  ·  doi:10.1101/860619

effectR: An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches

Javier F. Tabima, Niklaus J. Grünwald

Molecular Plant-Microbe Interactions®  ·  01 Sep 2019  ·  doi:10.1094/MPMI-10-18-0279-TA

From genomes to forest management – tackling invasivePhytophthoraspecies in the era of genomics

S. Keriö, H. A. Daniels, M. Gómez-Gallego, J. F. Tabima, R. R. Lenz, K. L. Søndreli, N. J. Grünwald, N. Williams, R. Mcdougal, J. M. LeBoldus

Canadian Journal of Plant Pathology  ·  26 Jul 2019  ·  doi:10.1080/07060661.2019.1626910

Genome-wide increased copy number is associated with emergence of super-fit clones of the Irish potato famine pathogen Phytophthora infestans

Brian J. Knaus, Javier F. Tabima, Shankar K. Shakya, Howard S. Judelson, Niklaus J. Grünwald

Cold Spring Harbor Laboratory  ·  16 May 2019  ·  doi:10.1101/633701

Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum

Angela L. Dale, Nicolas Feau, Sydney E. Everhart, Braham Dhillon, Barbara Wong, …, Danyu Shen, Clive M. Brasier, Brett M. Tyler, Niklaus J. Grünwald, Richard C. Hamelin

mBio  ·  30 Apr 2019  ·  doi:10.1128/mBio.02452-18

2018

Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia

M.F. Mideros, D.A. Turissini, N. Guayazán, H. Ibarra-Avila, G. Danies, …, D.E.L. Cooke, W.E. Fry, N. Grünwald, D.R. Matute, S. Restrepo

Persoonia - Molecular Phylogeny and Evolution of Fungi  ·  18 Dec 2018  ·  doi:10.3767/persoonia.2018.41.03

Evolution of the U.S. Biological Select Agent Rathayibacter toxicus

Edward W. Davis, Javier F. Tabima, Alexandra J. Weisberg, Lucas Dantas Lopes, Michele S. Wiseman, …, Elizabeth E. Rogers, Fernando D. Andreote, Niklaus J. Grünwald, Melodie L. Putnam, Jeff H. Chang

mBio  ·  05 Sep 2018  ·  doi:10.1128/mBio.01280-18

effectR: An expandable R package to predict candidate effectors

Javier F. Tabima, Niklaus J. Grünwald

Cold Spring Harbor Laboratory  ·  23 Aug 2018  ·  doi:10.1101/398404

Populations of Phytophthora rubi Show Little Differentiation and High Rates of Migration Among States in the Western United States

Javier F. Tabima, Michael D. Coffey, Inga A. Zazada, Niklaus J. Grünwald

Molecular Plant-Microbe Interactions®  ·  01 Jun 2018  ·  doi:10.1094/MPMI-10-17-0258-R

Genetic diversity of Phytophthora pluvialis, a pathogen of conifers, in New Zealand and the west coast of the United States of America

S. Brar, J. F. Tabima, R. L. McDougal, P.‐Y. Dupont, N. Feau, …, J. M. LeBoldus, N. J. Grünwald, E. M. Hansen, R. E. Bradshaw, N. M. Williams

Plant Pathology  ·  30 Jan 2018  ·  doi:10.1111/ppa.12812

2017

Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae

Javier F. Tabima, Brent A. Kronmiller, Caroline M. Press, Brett M. Tyler, Inga A. Zasada, Niklaus J. Grünwald

Molecular Plant-Microbe Interactions®  ·  01 Oct 2017  ·  doi:10.1094/MPMI-04-17-0081-A

Whole genome sequences of the raspberry and strawberry pathogensPhytophthora rubiandP. fragariae

Javier F. Tabima, Brent A. Kronmiller, Caroline M. Press, Brett M. Tyler, Inga A. Zasada, Niklaus J. Grünwald

Cold Spring Harbor Laboratory  ·  10 Mar 2017  ·  doi:10.1101/115824

2016

Genomic Analyses of Dominant U.S. Clonal Lineages ofPhytophthora infestansReveals a Shared Common Ancestry for Clonal Lineages US11 and US18 and a Lack of Recently Shared Ancestry Among All Other U.S. Lineages

B. J. Knaus, J. F. Tabima, C. E. Davis, H. S. Judelson, N. J. Grünwald

Phytopathology®  ·  01 Nov 2016  ·  doi:10.1094/PHYTO-10-15-0279-R

A Covert Operation by a Plant Pathogen

Jeff H. Chang, Javier F. Tabima

Cell Host & Microbe  ·  01 Oct 2016  ·  doi:10.1016/j.chom.2016.09.010

Microbe-ID: an open source toolbox for microbial genotyping and species identification

Javier F. Tabima, Sydney E. Everhart, Meredith M. Larsen, Alexandra J. Weisberg, Zhian N. Kamvar, Matthew A. Tancos, Christine D. Smart, Jeff H. Chang, Niklaus J. Grünwald

PeerJ  ·  18 Aug 2016  ·  doi:10.7717/peerj.2279

Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria

Edward W. Davis II, Alexandra J. Weisberg, Javier F. Tabima, Niklaus J. Grunwald, Jeff H. Chang

PeerJ  ·  19 Jul 2016  ·  doi:10.7717/peerj.2222

SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis

Zachariah R. Hansen, Brian J. Knaus, Javier F. Tabima, Caroline M. Press, Howard S. Judelson, Niklaus J. Grünwald, Christine D. Smart

Plant Disease  ·  01 Jul 2016  ·  doi:10.1094/pdis-11-15-1247-re

Microbe-ID: An open source toolbox for microbial genotyping and species identification

Javier F Tabima, Sydney E Everhart, Meredith M Larsen, Alexandra J Weisberg, Zhian N Kamvar, Matthew A Tancos, Christine D Smart, Jeff H Chang, Niklaus J Grünwald

PeerJ  ·  28 Apr 2016  ·  doi:10.7287/peerj.preprints.2005

Microbe-ID: An open source toolbox for microbial genotyping and species identification

Javier F Tabima, Sydney E Everhart, Meredith M Larsen, Alexandra J Weisberg, Zhian N Kamvar, Matthew A Tancos, Christine D Smart, Jeff H Chang, Niklaus J Grünwald

PeerJ  ·  28 Apr 2016  ·  doi:10.7287/peerj.preprints.2005v1

Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria

Edward W Davis II, Alexandra J Weisberg, Javier F Tabima, Niklaus J. Grunwald, Jeff Chang

PeerJ  ·  28 Apr 2016  ·  doi:10.7287/peerj.preprints.1998

Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria

Edward W Davis II, Alexandra J Weisberg, Javier F Tabima, Niklaus J. Grunwald, Jeff Chang

PeerJ  ·  28 Apr 2016  ·  doi:10.7287/peerj.preprints.1998v3

Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria

Edward W Davis II, Alexandra J Weisberg, Javier F Tabima, Niklaus J. Grunwald, Jeff Chang

PeerJ  ·  26 Apr 2016  ·  doi:10.7287/peerj.preprints.1998v2

Evolutionary history of the group formerly known as protists using a phylogenomics approach

Silvia Restrepo, Juan Enciso, Javier Tabima, Diego Mauricio Riaño-Pachón

Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales  ·  28 Mar 2016  ·  doi:10.18257/raccefyn.277

Loop‐mediated isothermal amplification for detection of the tomato and potato late blight pathogen, P hytophthora infestans

Z.R. Hansen, B.J. Knaus, J.F. Tabima, C.M. Press, H.S. Judelson, N.J. Grünwald, C.D. Smart

Journal of Applied Microbiology  ·  17 Mar 2016  ·  doi:10.1111/jam.13079

2015

Five new species of entomopathogenic fungi from the Amazon and evolution of neotropical Ophiocordyceps

Tatiana I. Sanjuan, Ana E. Franco-Molano, Ryan M. Kepler, Joseph W. Spatafora, Javier Tabima, Aída M. Vasco-Palacios, Silvia Restrepo

Fungal Biology  ·  01 Oct 2015  ·  doi:10.1016/j.funbio.2015.06.010

2014

Pathogenicity, Fungicide Resistance, and Genetic Variability ofPhytophthora rubiIsolates from Raspberry (Rubus idaeus) in the Western United States

Jane E. Stewart, Duncan Kroese, Javier F. Tabima, Meredith M. Larsen, Valerie J. Fieland, Caroline M. Press, Inga A. Zasada, Niklaus J. Grünwald

Plant Disease  ·  01 Dec 2014  ·  doi:10.1094/pdis-11-13-1130-re

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales

Marco A. Cristancho, David Octavio Botero-Rozo, William Giraldo, Javier Tabima, Diego Mauricio Riaño-Pachón, …, Andrés Durán, Silvia Restrepo, Tamar Eilam, Yehoshua Anikster, Alvaro L. Gaitán

Frontiers in Plant Science  ·  31 Oct 2014  ·  doi:10.3389/fpls.2014.00594

Speciation in Fungal and Oomycete Plant Pathogens

Silvia Restrepo, Javier F. Tabima, Maria F. Mideros, Niklaus J. Grünwald, Daniel R. Matute

Annual Review of Phytopathology  ·  04 Aug 2014  ·  doi:10.1146/annurev-phyto-102313-050056

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

Erica M. Goss, Javier F. Tabima, David E. L. Cooke, Silvia Restrepo, William E. Fry, Gregory A. Forbes, Valerie J. Fieland, Martha Cardenas, Niklaus J. Grünwald

Proceedings of the National Academy of Sciences  ·  02 Jun 2014  ·  doi:10.1073/pnas.1401884111

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald

PeerJ  ·  04 Mar 2014  ·  doi:10.7717/peerj.281

Entomopathogens of Amazonian stick insects and locusts are members of theBeauveriaspecies complex (Cordycepssensu stricto)

Tatiana Sanjuan, Javier Tabima, Silvia Restrepo, Thomas Læssøe, Joseph W. Spatafora, Ana Esperanza Franco-Molano

Mycologia  ·  01 Mar 2014  ·  doi:10.3852/13-020

Entomopathogens of Amazonian stick insects and locusts are members of theBeauveriaspecies complex (Cordycepssensu stricto)

Tatiana Sanjuan, Javier Tabima, Silvia Restrepo, Thomas Læssøe, Joseph W. Spatafora, Ana Esperanza Franco-Molano

Mycologia  ·  01 Mar 2014  ·  doi:10.3852/106.2.260

Phytophthora ramorum

Sydney E. Everhart, Javier F. Tabima, Niklaus J. Grünwald

Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens  ·  01 Jan 2014  ·  doi:10.1007/978-3-662-44056-8_8

Application of Genome Studies of Coffee Rust

Marco Cristancho, William Giraldo, David Botero, Javier Tabima, Diana Ortiz, Alejandro Peralta, Álvaro Gaitán, Silvia Restrepo, Diego Riaño

Advances in Intelligent Systems and Computing  ·  01 Jan 2014  ·  doi:10.1007/978-3-319-01568-2_20

2013

Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151

Mario L. Arrieta-Ortiz, Luis M. Rodríguez-R, Álvaro L. Pérez-Quintero, Lucie Poulin, Ana C. Díaz, …, Boris Szurek, Silvia Restrepo, Camilo López, Ralf Koebnik, Adriana Bernal

PLoS ONE  ·  22 Nov 2013  ·  doi:10.1371/journal.pone.0079704

Seborrheic dermatitis: predisposing factors and ITS2 secondary structure forMalasseziaphylogenic analysis

Yulien Amado, Anelvi Patiño-Uzcátegui, Maria C. Cepero de García, Javier Tabima, Adriana Motta, Martha Cárdenas, Adriana Bernal, Silvia Restrepo, Adriana Celis

Medical Mycology  ·  01 Nov 2013  ·  doi:10.3109/13693786.2013.820001

2011

Defining species boundaries in the genus Phytophthora: the case of Phytophthora andina A response to ‘Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands’ (Oliva et al., 2010)

M. Cárdenas, J. Tabima, W. E. Fry, N. J. Grünwald, A. Bernal, S. Restrepo

Plant Pathology  ·  04 Dec 2011  ·  doi:10.1111/j.1365-3059.2011.02530.x

Virulence Gene Expression in Malassezia spp from Individuals with Seborrheic Dermatitis

Anelvi Patiño-Uzcátegui, Yulien Amado, Maria Cepero de García, Diego Chaves, Javier Tabima, Adriana Motta, Martha Cárdenas, Adriana Bernal, Silvia Restrepo, Adriana Celis

Journal of Investigative Dermatology  ·  01 Oct 2011  ·  doi:10.1038/jid.2011.178

Phylogeography and molecular epidemiology of Papaya ringspot virus

X.A. Olarte Castillo, G. Fermin, J. Tabima, Y. Rojas, P.F. Tennant, M. Fuchs, R. Sierra, A.J. Bernal, S. Restrepo

Virus Research  ·  01 Aug 2011  ·  doi:10.1016/j.virusres.2011.04.011

First Report of Phytophthora infestans Causing Late Blight on Solanum viarum in Colombia

M. E. Cárdenas, E. Medina, J. Tabima, A. Vargas, C. Lopera, A. Bernal, S. Restrepo

Plant Disease  ·  01 Jul 2011  ·  doi:10.1094/pdis-11-10-0853

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[no publisher info]  ·  [no date info]  ·  issn:0120548X 19001649